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CHIP-Seq

ArrayGen > Services > Workshops / Training > CHIP-Seq

     
  Good News For Researchers !!!
A workshop for PhD students and post-doctoral researchers coming with their own real data sets will get the training and their data analysis done at considerable discount. After this course they will be able to analyze their own data and create ready-to-publish graphics.

Goals :

ChIP-Seq workshop is intended to introduce researchers to the basic principles of analyzing ChIP-seq data generated by next-gen sequencing approaches.


The training exercise covers major aspects of ChIP-seq data: analysis including quality control of data, mapping data to a reference genome, data normalization, peak calling, annotation of peak sequences, comparison of binding sites across samples, identification and analysis of motifs and visualization of results.


Training Information
Period of Training Offline - 15 days Training + 15 days Project work   [ 2 Hours Daily [ Monday To Saturday ] ]
Online - 15 days Training + 15 days Project work   [ 2 Hours Daily [ Monday To Saturday ] ]
Registration Open
(Training can be started on any date any timing as per the candidate convenience)
Module - I Advanced Bioinformatics & basic programming
Topics - Introduction to Bioinformatics
- Understanding Genomics Bioinformatics
- Databases & tools (NCBI,UCSC,BLAST,BLAT etc)
- Gene Prediction
- Genome Annotation
- Genome Vizualization
- Basic Perl programming
- Unix based commands
Module - II Next Generation Sequencing (NGS) - CHIPSeq Data Analysis
Topics - Overview of NGS
- Basics of DNA-protein binding & ChipSeq data analysis workflow
- Quality Control of the reads and statistics(FastQC/cutadapt/NGSToolkit)
- Alignment of ChipSeq data- Details of the tools and steps of alignment(Bowtie)
- File format of the aligned files(SAM/BAM)
- Peak calling with MACS and In-house algorithm
- Annotation of all DNA-protein binding regions based on gene/exon/intron/promoter
- Visualizing the peaks in a genome browser(UCSC/IGV)
- Motif Analysis in enriched peaks
Project Work Project will be assigned based on the training course selected.
Eligibility B.Sc/B.Tech/M.Tech. / M.Sc. /Ph.D /PostDocs/Any Life Sciences in Biological Science, Computer science, Pharmacy, Agriculture, Biotechnology, Molecular biology, Medicine, clinical research and other relevant Qualification in the life sciences areas are eligible.
Certificate All the participants will receive certificates on successful completion of training
Place ArrayGen, Pune, India
Contact info@arraygen.com



    

Registration is now open please request to sign up to reserve your place! If you are interested, you can mail us at info@arraygen.com. We hope to see you in this new year. Dont miss this opportunity.



 
 
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