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DNA-Seq

ArrayGen > Services > Workshops / Training > DNA-Seq (Genome Variant Detection)

     
  Good News For Researchers !!!
A workshop for PhD students and post-doctoral researchers coming with their own real data sets will get the training and their data analysis done at considerable discount. After this course they will be able to analyze their own data and create ready-to-publish graphics.

Goals :

DNA-Seq workshop will provide an introduction to next generation sequencing (NGS) platforms, custom data analysis and tools for data quality control and variant calling of DNA-Seq data.



Training Information
Period of Training Offline - 15 Days Training + 15 Days Project Work   [ 2 Hours Daily [ Monday To Saturday ] ]
Online - 15 Days Training + 15 Days Project Work   [ 2 Hours Daily [ Monday To Saturday ] ]
Registration Open
(Training can be started on any date any timing as per the candidate convenience)
Module - I Advanced Bioinformatics & basic programming
Topics - Introduction to Bioinformatics
- Understanding Genomics Bioinformatics
- Databases & tools (NCBI,UCSC,BLAST,BLAT etc)
- Gene Prediction
- Genome Annotation
- Genome Vizualization
- Basic Perl programming
- Unix based commands
Module - II Next Generation Sequencing (NGS) - DNA-Seq Data Analysis
Topics - Overview of NGS
- Data Retrieval (NCBI SRA) & Introduction to data types
- Read Quality Check (FastQC & Cutadapt)
- Alignment of reads using reference Genome (BWA/Bowtie)
- Understanding Mapping Output(SAM/BAM, Samtools & Bedtools)
- Variant detection using GATK & Samtools
- Visualization of variation with IGV
- Complete annotation and variant effect prediction(SNPEff, SNPDB etc)
- Predict the effects of coding non-synonymous variants on protein function using the SIFT algorithm
Project Work Project will be assigned based on the training course selected.
Eligibility B.Sc/B.Tech/M.Tech. / M.Sc. /Ph.D /PostDocs/Any Life Sciences in Biological Science, Computer science, Pharmacy, Agriculture, Biotechnology, Molecular biology, Medicine, clinical research and other relevant Qualification in the life sciences areas are eligible.
Certificate All the participants will receive certificates on successful completion of training
Place ArrayGen, Pune, India
Contact info@arraygen.com



    

Registration is now open please request to sign up to reserve your place! If you are interested, you can mail us at info@arraygen.com. We hope to see you in this new year. Dont miss this opportunity.



 
 
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