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Whole Genome de novo Assembly

ArrayGen > Services > Workshops / Training > Whole Genome de novo Assembly

     
  Good News For Researchers !!!
A workshop for PhD students and post-doctoral researchers coming with their own real data sets will get the training and their data analysis done at considerable discount. After this course they will be able to analyze their own data and create ready-to-publish graphics.

Goals :

Genome assembly refers to the process of taking a large number of short DNA sequences and putting them back together to create a representation of the original chromosomes from which the DNA originated. De novo genome assemblies assume no prior knowledge of the source DNA sequence length, layout or composition.
The goal of a sequence assembler is to produce long contiguous pieces of sequence (contigs) from these reads. The contigs are sometimes then ordered and oriented in relation to one another to form scaffolds. The distances between pairs of a set of paired end reads is useful information for this purpose.



Whole Genome de novo Online Training Information
Period of Training 15 days
Training Schedule 2 Hours Daily (One To One Training)
Training Mode Online(For online training candidate have to install Skype and AnyDesk)
Training Fees For course fee please request you to contact us at info@arraygen.com
Training Starting Date Registration -Open

(Training can be started on any date any timing as per the candidate convenience)
Module - I Advanced Bioinformatics
Topics - Introduction to Bioinformatics
- Understanding Genomics Bioinformatics
- Databases & tools (NCBI,UCSC,BLAST,BLAT etc)
- Gene Prediction
- Genome Annotation
- Genome Vizualization
- Basic Perl / Python programming
- Unix based commands
- Basic R programming
Module - III Whole Genome de novo Data Analysis
Topics - Data Retrieval (NCBI SRA) & Introduction to data types
- Read Quality Check (FastQC & Cutadapt)
- Contig Assembly(SPAdes/SOAPdenovo/velvet/Masurca/Canu)
- Scaffolding & Gap Closure
- Assembly statistics(N50 value etc)
- Repeat Masking
- SRR Discovery
- Gene/Orf prediction(prodigal/prokka/orf finder/Glimmer3/GeneMarkHMM/
- Functional annotation(Gene Ontology & Pathway(KEGG)/COG
- Genome and Gene representation using circos
- Phylogenetic Analysis
- Comparative genomics / Synteny Analysis
Eligibility B.Sc. / M.Sc. Biotech / Microbiology / Chemistry / Biochemistry / Botany / Zoology / Bioinformatics / Genetics / Any Life sciences graduates & Postgraduates/ Biomedical Genetics / Molecular Science / Biosciences) B.Tech., (Biotechnology / Industrial Biotechnology / Bioinformatics) B. Pharmacy / M. Pharmacy.
Industrial Exposure 100% based on Industrial exposure/Research
Certificate All the participants will receive certificates on successful completion of training
Place ArrayGen, Pune, India
Contact info@arraygen.com



    

Registration is now open please request to sign up to reserve your place! If you are interested, you can mail us at info@arraygen.com. We hope to see you in this new year. Dont miss this opportunity.



 
 
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ArrayGen Technologies Pvt. Ltd.
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E-mail :: info@arraygen.com

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