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Custom Pan-genome Microarrays | ArrayGen
custom array designing

Pan-genome

ArrayGen > Services > Custom Array Designing > Pan-genome

     
  Overview
Pan-genome Microarrays are used to determine the genetic makeup of un-known microbial strains and can introduce insights into phylogenetic relationships. At ArrayGen, we help you to design high quality probes for Pan-genome Microarrays which would help identify genotyping of unknown microbial iso-lates.



Genome wide determination of the genetic makeup of an un-known microbial iso-lates

Determine novel genomes and multiple genomes in a mixture

Validate the gene context of an unknown genome from re-sequencing next generation sequencing (NGS) data using microarrays

Arrays designed according to gene contexts of an unknown genome of interest to the customer

Cluster generation using CD-Hit and our own in-house propriatory tool

60-mer probe length

Probe selection based on %TM, %GC, PolyX, 3' end, self hybridization, nonoverlaping and high hybridization specificity

Removal of probes in repeat-masked and vector-masked regions

In silico hybridization check for each probe by BLASTN

We design one probe per target ( Core, Accessory and Unique ) regions. In case you would like to add more than one probe for each target, please let us know.

We also include additional probes for technical QC

Control probes are added based on platform specific protocol. In case you would like to add your own control probes, please let us know.

Complete annotation of designed probes for fast and easy data interpretation

High confidence in the design of your arrays

We focus on quality assurance followed by quality control process of array design

Maximum flexibility in array content and format to identify genome-wide expression levels of thousands of genes

Ensures highest level of coverage, uniformity, specificity and sensitivity of your arrays

Quick turnaround time from 3 days to a week

Cost-effective formats for your array designing

Complete support on array designing services




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ArrayGen Technologies Pvt. Ltd.
Godai Niwas 19, Shivaji Chowk, Mokate Chawl, Kothrud Gaothan, Near Shivaji Statue, Kothrud, Pune - 411038. Maharashtra (India)
Phone :: +91 20 65228007
Mobile :: +91 9673625446
Skype :: arraygen
E-mail :: info@arraygen.com

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