custom array designing
Sitemap | Connect with us:   GenArrays facebook GenArrays twitter GenArrays linkdin GenArrays linkdin
custom array designing
Core Services


ArrayGen > Services > Workshops / Training > ATAC-Seq

  Good News For Researchers !!!
A workshop for PhD students and post-doctoral researchers coming with their own real data sets will get the training and their data analysis done at considerable discount. After this course they will be able to analyze their own data and create ready-to-publish graphics.

Goals :

ATAC-Seq workshop intends to introduce researchers to the basic principles of analyzing ATAC seq data generated by next-gen sequencing approaches.The most important NGS file formats (fastq, sam/bam etc.) are introduced and one can proceed with hands-on analyses (QC, mapping, visualization). Now a days, single-cell ATAC-seq (scATAC-seq) has also introduced to provide insights into cell-to-cell variation.

In this hands-on session we will align example data from an ATAC-Seq experiment against the genome, assign the reads to genes, count the expression of genes and then check for statistical analysis to cluster cells into putative subpopulations.

More than 750+ candidates have taken this course and have successfully build their career in Bioinformatics.

Hurry up and register soon...To become expert in Bioinformatics !

## 10% Discount if you register before 25th September, 2022 . Hurry up!!

ATAC Seq Information
Period of Training Offline - 15 days Training   [ 2 Hours Daily [ Monday To Friday ] ]
Online - 15 days Training   [ 2 Hours Daily [ Monday To Friday ] ]
Registration Open
(Training can be started on any date any timing as per the candidate convenience)
Module - I Advanced Bioinformatics & basic programming
Topics - Introduction to Bioinformatics
- Understanding Genomics Bioinformatics
- Databases & tools (NCBI,UCSC,BLAST,BLAT etc)
- Standalone BLAST Understanding for large scale genomic data handaling
- Gene Prediction
- Genome Annotation
- Genome Vizualization
- Basics of Programming (Python)
- Linux for NGS data analysis
Module - III Next Generation Sequencing (NGS) – ATAC-Seq Data Analysis
Topics - Overview of NGS & detailed understanding
- Basics of DNA-protein binding & ATAC-Seq data analysis workflow
- Data Retrieval (NCBI SRA) & Introduction to data types
- Read Quality Check (FastQC & Cutadapt)
- Alignment of ATAC-Seq data- Details of the tools and steps of alignment(Bowtie)
- File format of the aligned files(SAM/BAM)
- Peak calling with MACS and In-house algorithm
- Annotation of all DNA-protein binding regions based on gene/exon/intron/promoter(CHIPSeeker)
- Visualizing the peaks in a genome browser(UCSC/IGV)
- Motif Analysis in enriched peaks
Eligibility B.Sc/B.Tech/M.Tech. / M.Sc. /Ph.D /PostDocs/Any Life Sciences in Biological Science, Computer science, Pharmacy, Agriculture, Biotechnology, Molecular biology, Medicine, clinical research and other relevant Qualification in the life sciences areas are eligible.
Certificate All the participants will receive certificates on successful completion of training
Place ArrayGen, Pune, India


Registration is now open please request to sign up to reserve your place! If you are interested, you can mail us at We hope to see you in this new year. Dont miss this opportunity.

About Us
Contact Us
ArrayGen Technologies Pvt. Ltd.
Raj Tower 3rd Floor, Shivaji Chowk, Near Shivaji statue,Kothrud, Pune,Maharashtra 411038 (India)
Phone :: +91 2025395446
Mobile :: +91 9673625446
Skype :: arraygen
E-mail ::

Leave this empty:

© 2015 ArrayGen Technologies Pvt. Ltd. All Rights Reserved.