Application
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GWAS
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Period of Training
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Online - 21 Days Training [ 2 Hours Daily [ Monday To Friday ] ]
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Course Fee
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For course fee please request you to contact us at info@arraygen.com
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Training Starting Date
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Our training is one to one and training can also be started anytime and anydate as per the candidate convenience.
** Weekend Batches are also available as per the request
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Training Slots
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Our working Time is 9:00 AM to 6:00 PM Indian Time
Available slots - 9:00 AM to 11:00 AM / 11:00 AM to 1:00 PM / 2:00 PM to 4:00 PM / 4:00 PM to 6:00 PM
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Training Mode
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Online
Online(For online training candidate have to install Skype and AnyDesk / ZOOM )(it is same like offline)
All our training is one to one and 100% focus with individual candidate which provides 100% learning.
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Module - I
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Advanced Bioinformatics
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Topics
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Introduction to Bioinformatics & Genomics
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Introduction to Bioinformatics
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Understanding Genomics Bioinformatics
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Databases & tools (NCBI,UCSC,BLAST,BLAT etc)
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Standalone BLAST Understanding for large scale genomic data handaling
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Gene Prediction
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Genome Annotation
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Genome Vizualization
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Basics of Programming (Python)
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Linux for NGS data analysis
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Module - II
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GWAS
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Topics
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Overview of NGS & variation calling & GWAS
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Data Retrieval (NCBI SRA) & Introduction to data types
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Read Quality Check (FastQC & Cutadapt)
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Alignment of reads using reference Genome (BWA/Bowtie)
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Understanding Mapping Output(SAM/BAM, Samtools & Bedtools)
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Variant detection using GATK
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Visualization of variation with IGV
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Complete annotation and variant effect prediction(Ensemble VEP)
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Example VCF data from population Case & Control for GWAS study
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VCF file format
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Quality control of Samples, Variants and genotypes
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GWAS analysis using Hail pipeline
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Normalisation for confounding caused by population stratification
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Visualisation of GWAS results (Manhattan plot and QQ-Plot)
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Disease associated mutation Interpretation
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Eligibility
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B.Sc/B.Tech/M.Tech. / M.Sc. /Ph.D /PostDocs/Any Life Sciences in Biological Science, Computer science, Pharmacy, Agriculture, Biotechnology, Molecular biology, Medicine, clinical research and other relevant Qualification in the life sciences areas are eligible.
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Certificate
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All the participants will receive certificates on successful completion of training
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Place
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ArrayGen, Pune, India
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Contact
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info@arraygen.com
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