Application
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GWAS
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Period of Training
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Offline - 21 Days Training [ 2 Hours Daily [ Monday To Friday ] ] /
Online - 21 Days Training [ 2 Hours Daily [ Monday To Friday ] ]
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Course Fee
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For course fee please request you to contact us at info@arraygen.com
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Training Starting Date
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Our training is one to one and training can also be started anytime and anydate as per the candidate convenience.
** Weekend Batches are also available as per the request
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Training Slots
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Our working Time is 9:00 AM to 6:00 PM Indian Time
Available slots - 9:00 AM to 11:00 AM / 11:00 AM to 1:00 PM / 2:00 PM to 4:00 PM / 4:00 PM to 6:00 PM
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Training Mode
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Online/Offline
Online(For online training candidate have to install Skype and AnyDesk / ZOOM )(it is same like offline)
Offline(For offline training candidate have to come to head office Pune and bring their own laptop).
All our training is one to one and 100% focus with individual candidate which provides 100% learning.
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Module - I
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Advanced Bioinformatics
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Topics
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Introduction to Bioinformatics & Genomics
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Introduction to Bioinformatics
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Understanding Genomics Bioinformatics
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Databases & tools (NCBI,UCSC,BLAST,BLAT etc)
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Standalone BLAST Understanding for large scale genomic data handaling
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Gene Prediction
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Genome Annotation
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Genome Vizualization
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Basics of Programming (Python)
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Linux for NGS data analysis
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Module - II
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GWAS
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Topics
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Overview of NGS & variation calling & GWAS
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Data Retrieval (NCBI SRA) & Introduction to data types
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Read Quality Check (FastQC & Cutadapt)
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Alignment of reads using reference Genome (BWA/Bowtie)
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Understanding Mapping Output(SAM/BAM, Samtools & Bedtools)
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Variant detection using GATK
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Visualization of variation with IGV
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Complete annotation and variant effect prediction(Ensemble VEP)
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Example VCF data from population Case & Control for GWAS study
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VCF file format
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Quality control of Samples, Variants and genotypes
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GWAS analysis using Hail pipeline
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Normalisation for confounding caused by population stratification
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Visualisation of GWAS results (Manhattan plot and QQ-Plot)
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Disease associated mutation Interpretation
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Eligibility
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B.Sc/B.Tech/M.Tech. / M.Sc. /Ph.D /PostDocs/Any Life Sciences in Biological Science, Computer science, Pharmacy, Agriculture, Biotechnology, Molecular biology, Medicine, clinical research and other relevant Qualification in the life sciences areas are eligible.
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Certificate
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All the participants will receive certificates on successful completion of training
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Place
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ArrayGen, Pune, India
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Contact
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info@arraygen.com
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