|
|
|
| |
|
|
 |
|
NGS Training |
Next Generation Sequencing (NGS), a recently evolved technology, have served a lot in the research and development sector of our society. NGS methods are highly parallelized enabling to sequence thousands to millions of molecules simultaneously. This technology results into huge amount of data, which need to be analysed to conclude valuable information. Analysis of NGS data unravels important clues in quest for the treatment of various life-threatening diseases; improved crop varieties and other related scientific problems related to human welfare. |
Participants will be introduced with its applicability to real-time data analysis problem. All our training content is as per industrial requirement and 100% practical exposure which will help candidate to make their better career in the field of bioinformatics.
More than 300+ candidates have taken this course and have successfully build their career in Bioinformatics.
NGS data analysis now you can learn with your own datasets and you can learn NGS analysis to implement for your paper publication or defense your thesis.
Hurry up and register soon...To become expert in Bioinformatics !
## 10% Discount if you register before 25th September, 2023. Hurry up!!
- RNASeq [R]
- RNASeq [D]
- scRNA-Seq
- ATAC-Seq
- lncRNA-Seq
- DNASeq
- ChipSeq
- MethylSeq
- miRNA-Seq
- Whole Genome de novo Assembly
- Targeted metagenomics
- Whole Genome Metagenomics
- Metatranscriptomics
- PSI-Seq
NGS Application
RNASeq - Reference RNASeq / Differential expression / Bulk RNA analysis
Period Of Training
15 days
Training Schedule
2 Hours Daily (One To One Training) Monday to Friday
Training Slots
Our working Time is 9:00 AM to 6:00 PM Indian Time
Available slots - 9:00 AM to 11:00 AM / 11:00 AM to 1:00 PM / 2:00 PM to 4:00 PM / 4:00 PM to 6:00 PM
Training Mode
Online/Offline
Online(For online training candidate have to install Skype and AnyDesk)(it is same like offline)
Offline(For offline training candidate have to come to head office Pune and bring their own laptop)
Sequencing Platform
Illumina / Ion Torrent
if other platform pacbio or nanopore or any other sequencing platform kindly write email to us.
Raw data
Demo Raw Data (NCBI SRA Database)
OR
one control and one treatment sample raw data from candidate will be included
If more than two sample in that case it will be under custom training kindly inquire
Training Starting Date
Registration - Open
Training can be started on any date any timing as per the candidate convenience
Module-I
Advanced Bioinformatics
- Introduction to Bioinformatics
- Understanding Genomics Bioinformatics
- Industry based Databases Data Retreival (NCBI,UCSC - Batch retreival Understanding)
- Gene and Genome data Vizualization - UCSC
- Gene Prediction and Functional annotation
- Industry based Tools execution (BLAST,BLAT etc)
- Standalone/offline BLAST Understanding for large scale genomic data handaling
- PCR primer designing and specificity check
- Basics of Programming (Python)
- Linux for NGS data analysis
Module-III
RNASeq(Ref Based) Data Analysis
- Overview of NGS & detailed understanding
- Data Retrieval (NCBI SRA) & Data types
- Read Quality Check (FastQC & Cutadapt)
- Alignment of reads using reference Genome (Tophat / STAR)
- Visualization of mapped reads (UCSC & IGV)
- Gene Expression Quantification (Coverage, FPKM)
- Differential expression analysis (Cufflink, cuffmerge & cuffdiff)
- Pathway & Gene ontology enrichment analysis
- Pathway Network analysis using stringDB(PPI) & Cytoscapes
- Pathway Network Analysis using KEGG Mapper tool for all DEG genes
- Basics on R programming
- Different plots (Heatmap,volcano plot etc) using R
Eligibility
B.Sc. / M.Sc. Biotech / Microbiology / Chemistry / Biochemistry / Botany / Zoology / Bioinformatics / Genetics / Any Life sciences graduates & Postgraduates/ Biomedical Genetics / Molecular Science / Biosciences) B.Tech., (Biotechnology / Industrial Biotechnology / Bioinformatics) B. Pharmacy / M. Pharmacy.
Industrial Exposure
100% based on Industrial exposure/Research
Certificate
All the participants will receive certificates on successful completion of training
Support
- live recording during training as well as training manual will be provided
- Additional 2hrs of support after completion of training
- server access if the candidate laptop/desktop will not support for analysis
Payment Options
Paypal/Wire Transfer/cheque/Gpay/PhonePay/Online Gateway Razorpay(National and International)/Any UPI Payment
NGS Application
RNASeq - Denovo RNASeq / Differential expression / Bulk RNA analysis
Period Of Training
15 days
Training Schedule
2 Hours Daily (One To One Training) Monday to Friday
Training Slots
Our working Time is 9:00 AM to 6:00 PM Indian Time
Available slots - 9:00 AM to 11:00 AM / 11:00 AM to 1:00 PM / 2:00 PM to 4:00 PM / 4:00 PM to 6:00 PM
Training Mode
Online/Offline
Online(For online training candidate have to install Skype and AnyDesk)(it is same like offline)
Offline(For offline training candidate have to come to head office Pune and bring their own laptop)
Sequencing Platform
Illumina / Ion Torrent
if other platform pacbio or nanopore or any other sequencing platform kindly write email to us.
Raw data
Demo Raw Data (NCBI SRA Database)
OR
one control and one treatment sample raw data from candidate will be included
If more than two sample in that case it will be under custom training kindly inquire
Training Starting Date
Registration - Open
Training can be started on any date any timing as per the candidate convenience
Module-I
Advanced Bioinformatics
- Introduction to Bioinformatics
- Understanding Genomics Bioinformatics
- Industry based Databases Data Retreival (NCBI,UCSC - Batch retreival Understanding)
- Gene and Genome data Vizualization - UCSC
- Gene Prediction and Functional annotation
- Industry based Tools execution (BLAST,BLAT etc)
- Standalone/offline BLAST Understanding for large scale genomic data handaling
- PCR primer designing and specificity check
- Basics of Programming (Python)
- Linux for NGS data analysis
Module-III
RNASeq (Denovo based) Data Analysis
- Overview of NGS & detailed understanding
- Data Retrieval (NCBI SRA) & Data types
- Read Quality Check (FastQC & Cutadapt)
- Read Transcriptome Assembly (Trinity)
- Visualization of mapped reads on Assembled Transcriptome(UCSC & IGV)
- Gene Expression Quantification (Coverage, FPKM)
- Differential expression analysis (EdgeR / DESeq2)
- Pathway & Gene ontology enrichment analysis
- Pathway Network Analysis
- Basics on R programming
- Different plots (Heatmap,volcano plot etc) using R
Eligibility
B.Sc. / M.Sc. Biotech / Microbiology / Chemistry / Biochemistry / Botany / Zoology / Bioinformatics / Genetics / Any Life sciences graduates & Postgraduates/ Biomedical Genetics / Molecular Science / Biosciences) B.Tech., (Biotechnology / Industrial Biotechnology / Bioinformatics) B. Pharmacy / M. Pharmacy.
Industrial Exposure
100% based on Industrial exposure/Research
Certificate
All the participants will receive certificates on successful completion of training
Support
- live recording during training as well as training manual will be provided
- Additional 2hrs of support after completion of training
- server access if the candidate laptop/desktop will not support for analysis
Payment Options
Paypal/Wire Transfer/cheque/Gpay/PhonePay/Online Gateway Razorpay(National and International)/Any UPI Payment
NGS Application
Single Cell RNASeq - Single Cell RNA expression analysis
Period Of Training
15 days
Training Schedule
2 Hours Daily (One To One Training) Monday to Friday
Training Slots
Our working Time is 9:00 AM to 6:00 PM Indian Time
Available slots - 9:00 AM to 11:00 AM / 11:00 AM to 1:00 PM / 2:00 PM to 4:00 PM / 4:00 PM to 6:00 PM
Training Mode
Online/Offline
Online(For online training candidate have to install Skype and AnyDesk)(it is same like offline)
Offline(For offline training candidate have to come to head office Pune and bring their own laptop)
Sequencing Platform
Illumina / Ion Torrent
if other platform pacbio or nanopore or any other sequencing platform kindly write email to us.
Raw data
Demo Raw Data (NCBI SRA Database)
OR
one control and one treatment sample raw data from candidate will be included
If more than two sample in that case it will be under custom training kindly inquire
Training Starting Date
Registration - Open
Training can be started on any date any timing as per the candidate convenience
Module-I
Advanced Bioinformatics
- Introduction to Bioinformatics
- Understanding Genomics Bioinformatics
- Industry based Databases Data Retreival (NCBI,UCSC - Batch retreival Understanding)
- Gene and Genome data Vizualization - UCSC
- Gene Prediction and Functional annotation
- Industry based Tools execution (BLAST,BLAT etc)
- Standalone/offline BLAST Understanding for large scale genomic data handaling
- PCR primer designing and specificity check
- Basics of Programming (Python)
- Linux for NGS data analysis
Module-III
Single Cell RNAseq Data Analysis
- Overview of NGS & detailed understandingg
- Data Retrieval (NCBI SRA) & Introduction to data types
- Read Quality Check (FastQC & Cutadapt)
- Alignment of reads using reference Genome (Tophat)
- Visualization of mapped reads (IGV)
- Gene Expression Quantification (Coverage,FPKM)
- Analyzing single-cell RNA-seq data containing read counts using R programming
• Quality control of cells
• Filter out low abundance genes
• Normalization of cell-specific biases
• Denoising expression values using PCA
• Defining cell clusters and detecting marker genes
• Different plots using R (heatmap & expression plots)
Eligibility
B.Sc. / M.Sc. Biotech / Microbiology / Chemistry / Biochemistry / Botany / Zoology / Bioinformatics / Genetics / Any Life sciences graduates & Postgraduates/ Biomedical Genetics / Molecular Science / Biosciences) B.Tech., (Biotechnology / Industrial Biotechnology / Bioinformatics) B. Pharmacy / M. Pharmacy.
Industrial Exposure
100% based on Industrial exposure/Research
Certificate
All the participants will receive certificates on successful completion of training
Support
- live recording during training as well as training manual will be provided
- Additional 2hrs of support after completion of training
- server access if the candidate laptop/desktop will not support for analysis
Payment Options
Paypal/Wire Transfer/cheque/Gpay/PhonePay/Online Gateway Razorpay(National and International)/Any UPI Payment
NGS Application
ATASeq - Transposase-Accessible Chromatin using sequencing / Bulk analysis
Period Of Training
15 days
Training Schedule
2 Hours Daily (One To One Training) Monday to Friday
Training Slots
Our working Time is 9:00 AM to 6:00 PM Indian Time
Available slots - 9:00 AM to 11:00 AM / 11:00 AM to 1:00 PM / 2:00 PM to 4:00 PM / 4:00 PM to 6:00 PM
Training Mode
Online/Offline
Online(For online training candidate have to install Skype and AnyDesk)(it is same like offline)
Offline(For offline training candidate have to come to head office Pune and bring their own laptop)
Sequencing Platform
Illumina / Ion Torrent
if other platform pacbio or nanopore or any other sequencing platform kindly write email to us.
Raw data
Demo Raw Data (NCBI SRA Database)
OR
one control and one treatment sample raw data from candidate will be included
If more than two sample in that case it will be under custom training kindly inquire
Training Starting Date
Registration - Open
Training can be started on any date any timing as per the candidate convenience
Module-I
Advanced Bioinformatics
- Introduction to Bioinformatics
- Understanding Genomics Bioinformatics
- Industry based Databases Data Retreival (NCBI,UCSC - Batch retreival Understanding)
- Gene and Genome data Vizualization - UCSC
- Gene Prediction and Functional annotation
- Industry based Tools execution (BLAST,BLAT etc)
- Standalone/offline BLAST Understanding for large scale genomic data handaling
- PCR primer designing and specificity check
- Basics of Programming (Python)
- Linux for NGS data analysis
Module-III
ATASeq Data Analysis
- Overview of NGS & detailed understanding
- Basics of DNA-protein binding & ATAC-Seq data analysis workflow
- Data Retrieval (NCBI SRA) & Introduction to data types
- Read Quality Check (FastQC & Cutadapt)
- Alignment of ATAC-Seq data- Details of the tools and steps of alignment(Bowtie)
- File format of the aligned files(SAM/BAM)
- Peak calling with MACS and In-house algorithm
- Annotation of all DNA-protein binding regions based on gene/exon/intron/promoter(CHIPSeeker)
- Visualizing the peaks in a genome browser(UCSC/IGV)
- Motif Analysis in enriched peaks
Eligibility
B.Sc. / M.Sc. Biotech / Microbiology / Chemistry / Biochemistry / Botany / Zoology / Bioinformatics / Genetics / Any Life sciences graduates & Postgraduates/ Biomedical Genetics / Molecular Science / Biosciences) B.Tech., (Biotechnology / Industrial Biotechnology / Bioinformatics) B. Pharmacy / M. Pharmacy.
Industrial Exposure
100% based on Industrial exposure/Research
Certificate
All the participants will receive certificates on successful completion of training
Support
- live recording during training as well as training manual will be provided
- Additional 2hrs of support after completion of training
- server access if the candidate laptop/desktop will not support for analysis
Payment Options
Paypal/Wire Transfer/cheque/Gpay/PhonePay/Online Gateway Razorpay(National and International)/Any UPI Payment
NGS Application
LncRNASeq - Detection of LncRNA and differential expression analysis
Period Of Training
15 days
Training Schedule
2 Hours Daily (One To One Training) Monday to Friday
Training Slots
Our working Time is 9:00 AM to 6:00 PM Indian Time
Available slots - 9:00 AM to 11:00 AM / 11:00 AM to 1:00 PM / 2:00 PM to 4:00 PM / 4:00 PM to 6:00 PM
Training Mode
Online/Offline
Online(For online training candidate have to install Skype and AnyDesk)(it is same like offline)
Offline(For offline training candidate have to come to head office Pune and bring their own laptop)
Sequencing Platform
Illumina / Ion Torrent
if other platform pacbio or nanopore or any other sequencing platform kindly write email to us.
Raw data
Demo Raw Data (NCBI SRA Database)
OR
one control and one treatment sample raw data from candidate will be included
If more than two sample in that case it will be under custom training kindly inquire
Training Starting Date
Registration - Open
Training can be started on any date any timing as per the candidate convenience
Module-I
Advanced Bioinformatics
- Introduction to Bioinformatics
- Understanding Genomics Bioinformatics
- Industry based Databases Data Retreival (NCBI,UCSC - Batch retreival Understanding)
- Gene and Genome data Vizualization - UCSC
- Gene Prediction and Functional annotation
- Industry based Tools execution (BLAST,BLAT etc)
- Standalone/offline BLAST Understanding for large scale genomic data handaling
- PCR primer designing and specificity check
- Basics of Programming (Python)
- Linux for NGS data analysis
Module-III
LncRNASeq Data Analysis
- Overview of NGS & detailed understanding
- Data Retrieval (NCBI SRA) & Introduction to data types
- Read Quality Check (FastQC & Cutadapt)
- Alignment of reads using reference Genome (Tophat/StringTie)
- Visualization of mapped reads (IGV)
- Gene Expression Quantification (Coverage,FPKM)
- Differential expression analysis( Cufflinks, cuffmerge & cuffdiff )
- lncRNA identification using filteration criteria(CPC2,CNCI)
- Different plots using R (heatmap & volcano plots)
- Pathway & Gene ontology enrichment analysis
- Co-expression Analysis with WGCNA in R
Eligibility
B.Sc. / M.Sc. Biotech / Microbiology / Chemistry / Biochemistry / Botany / Zoology / Bioinformatics / Genetics / Any Life sciences graduates & Postgraduates/ Biomedical Genetics / Molecular Science / Biosciences) B.Tech., (Biotechnology / Industrial Biotechnology / Bioinformatics) B. Pharmacy / M. Pharmacy.
Industrial Exposure
100% based on Industrial exposure/Research
Certificate
All the participants will receive certificates on successful completion of training
Support
- live recording during training as well as training manual will be provided
- Additional 2hrs of support after completion of training
- server access if the candidate laptop/desktop will not support for analysis
Payment Options
Paypal/Wire Transfer/cheque/Gpay/PhonePay/Online Gateway Razorpay(National and International)/Any UPI Payment
NGS Application
DNASeq-Variation Detection(whole exome/genome/any regions)
Period Of Training
15 days
Training Schedule
2 Hours Daily (One To One Training) Monday to Friday
Training Slots
Our working Time is 9:00 AM to 6:00 PM Indian Time
Available slots - 9:00 AM to 11:00 AM / 11:00 AM to 1:00 PM / 2:00 PM to 4:00 PM / 4:00 PM to 6:00 PM
Training Mode
Online/Offline
Online(For online training candidate have to install Skype and AnyDesk)(it is same like offline)
Offline(For offline training candidate have to come to head office Pune and bring their own laptop)
Sequencing Platform
Illumina / Ion Torrent
if other platform pacbio or nanopore or any other sequencing platform kindly write email to us.
Raw data
Demo Raw Data (NCBI SRA Database)
OR
one sample raw data from candidate will be included
If more than one sample in that case it will be under custom training kindly inquire
Training Starting Date
Registration - Open
Training can be started on any date any timing as per the candidate convenience
Module-I
Advanced Bioinformatics
- Introduction to Bioinformatics
- Understanding Genomics Bioinformatics
- Industry based Databases Data Retreival (NCBI,UCSC - Batch retreival Understanding)
- Gene and Genome data Vizualization - UCSC
- Gene Prediction and Functional annotation
- Industry based Tools execution (BLAST,BLAT etc)
- Standalone/offline BLAST Understanding for large scale genomic data handaling
- PCR primer designing and specificity check
- Basics of Programming (Python)
- Linux for NGS data analysis
Module-III
DNAseq Data Analysis
- Overview of NGS
- Data Retrieval (NCBI SRA) & Introduction to data types
- Read Quality Check (FastQC & Cutadapt)
- Alignment of reads using reference Genome (BWA/Bowtie)
- Understanding Mapping Output(SAM/BAM, Samtools & Bedtools)
- Variant detection using GATK & Samtools
- Visualization of variation with ArrayGen Genome Browser / IGV
- Complete annotation and variant effect prediction(SNPEff, SNPDB etc)
- Predict the effects of coding non-synonymous variants on protein function using
the SIFT algorithm
Eligibility
B.Sc. / M.Sc. Biotech / Microbiology / Chemistry / Biochemistry / Botany / Zoology / Bioinformatics / Genetics / Any Life sciences graduates & Postgraduates/ Biomedical Genetics / Molecular Science / Biosciences) B.Tech., (Biotechnology / Industrial Biotechnology / Bioinformatics) B. Pharmacy / M. Pharmacy.
Industrial Exposure
100% based on Industrial exposure/Research
Certificate
All the participants will receive certificates on successful completion of training
Support
- live recording during training as well as training manual will be provided
- Additional 2hrs of support after completion of training
- server access if the candidate laptop/desktop will not support for analysis
Payment Options
Paypal/Wire Transfer/cheque/Gpay/PhonePay/Online Gateway Razorpay(National and International)/Any UPI Payment
NGS Application
Chip-Seq (DNA-Protein binding/histone modification)
Period Of Training
15 days
Training Schedule
2 Hours Daily (One To One Training) Monday to Friday
Training Slots
Our working Time is 9:00 AM to 6:00 PM Indian Time
Available slots - 9:00 AM to 11:00 AM / 11:00 AM to 1:00 PM / 2:00 PM to 4:00 PM / 4:00 PM to 6:00 PM
Training Mode
Online/Offline
Online(For online training candidate have to install Skype and AnyDesk)(it is same like offline)
Offline(For offline training candidate have to come to head office Pune and bring their own laptop)
Sequencing Platform
Illumina / Ion Torrent
if other platform pacbio or nanopore or any other sequencing platform kindly write email to us.
Raw data
Demo Raw Data (NCBI SRA Database)
OR
one control and one treatment raw data from candidate will be included
If more than two sample in that case it will be under custom training kindly inquire
Training Starting Date
Registration - Open
Training can be started on any date any timing as per the candidate convenience
Module-I
Advanced Bioinformatics
- Introduction to Bioinformatics
- Understanding Genomics Bioinformatics
- Industry based Databases Data Retreival (NCBI,UCSC - Batch retreival Understanding)
- Gene and Genome data Vizualization - UCSC
- Gene Prediction and Functional annotation
- Industry based Tools execution (BLAST,BLAT etc)
- Standalone/offline BLAST Understanding for large scale genomic data handaling
- PCR primer designing and specificity check
- Basics of Programming (Python)
- Linux for NGS data analysis
Module-III
ChipSeq Data Analysis
- Complete Understanding of NGS technique and its Workflow
- Undersatnding of DNA-protein binding & ChipSeq data analysis workflow
- Quality Control of the reads and statistics(FastQC)
- Raw Reads trimming and cleaning(fastp/cutadapt)
- Alignment of ChipSeq data- Details of the tools and steps of alignment(Bowtie2)
- File format of the aligned files(SAM/BAM)
- Peak calling and understanding algorithm(MACS2)
- Differential Binding Analysis based on control and treatement(edgeR)
- GO and Pathway enrichment analysis(KEGG/PantherDB/ShinyGO)
- Different plots(Heatmap and volcano plots) in R
- Annotation and vizualization of gene/exon/intron/promoter(CHIPSeeker/Homer)
- Motif Analysis in enriched peaks(MEME)
- All the Results Interpretation and Understading for Chip-Seq NGS data Analysis
Eligibility
B.Sc. / M.Sc. Biotech / Microbiology / Chemistry / Biochemistry / Botany / Zoology / Bioinformatics / Genetics / Any Life sciences graduates & Postgraduates/ Biomedical Genetics / Molecular Science / Biosciences) B.Tech., (Biotechnology / Industrial Biotechnology / Bioinformatics) B. Pharmacy / M. Pharmacy.
Industrial Exposure
100% based on Industrial exposure/Research
Certificate
All the participants will receive certificates on successful completion of training
Support
- live recording during training as well as training manual will be provided
- Additional 2hrs of support after completion of training
- server access if the candidate laptop/desktop will not support for analysis
Payment Options
Paypal/Wire Transfer/cheque/Gpay/PhonePay/Online Gateway Razorpay(National and International)/Any UPI Payment
NGS Application
MethylSeq (Genome wide detection of Methylation and Unmethylation/CpG islands/RRBS)
Period Of Training
15 days
Training Schedule
2 Hours Daily (One To One Training) Monday to Friday
Training Slots
Our working Time is 9:00 AM to 6:00 PM Indian Time
Available slots - 9:00 AM to 11:00 AM / 11:00 AM to 1:00 PM / 2:00 PM to 4:00 PM / 4:00 PM to 6:00 PM
Training Mode
Online/Offline
Online(For online training candidate have to install Skype and AnyDesk)(it is same like offline)
Offline(For offline training candidate have to come to head office Pune and bring their own laptop)
Sequencing Platform
Illumina / Ion Torrent
if other platform pacbio or nanopore or any other sequencing platform kindly write email to us.
Raw data
Demo Raw Data (NCBI SRA Database)
OR
one control and one treatment raw data from candidate will be included
If more than two sample in that case it will be under custom training kindly inquire
Training Starting Date
Registration - Open
Training can be started on any date any timing as per the candidate convenience
Module-I
Advanced Bioinformatics
- Introduction to Bioinformatics
- Understanding Genomics Bioinformatics
- Industry based Databases Data Retreival (NCBI,UCSC - Batch retreival Understanding)
- Gene and Genome data Vizualization - UCSC
- Gene Prediction and Functional annotation
- Industry based Tools execution (BLAST,BLAT etc)
- Standalone/offline BLAST Understanding for large scale genomic data handaling
- PCR primer designing and specificity check
- Basics of Programming (Python)
- Linux for NGS data analysis
Module-III
Methylseq Data Analysis
- Overview of NGS - Basics of DNA Methylation & Concept of Bisulphite conversion
- Read Quality Check(FastQC/Trim galore/cutadapt)
- Alignment of Methylation data- Details of the tools and steps of alignment(BisMark)
- File format of the aligned files(SAM/BAM)
- Analysis of bisulphite conversion after alignment
- QC filters to improve the quality of the data
- Downstream analysis- Identify differentially methylated regions, fragment based,
CpG based and window based analysis(Methylkit/DMAP)
- Annotation of all CpG regions based on gene/exon/intron/promoter
- Compare differential methylation between two groups
- Statistically significant methylated genes
- Analyzing the Expression and Methylation data from TCGA for validation with experimental data
Eligibility
B.Sc. / M.Sc. Biotech / Microbiology / Chemistry / Biochemistry / Botany / Zoology / Bioinformatics / Genetics / Any Life sciences graduates & Postgraduates/ Biomedical Genetics / Molecular Science / Biosciences) B.Tech., (Biotechnology / Industrial Biotechnology / Bioinformatics) B. Pharmacy / M. Pharmacy.
Industrial Exposure
100% based on Industrial exposure/Research
Certificate
All the participants will receive certificates on successful completion of training
Support
- live recording during training as well as training manual will be provided
- Additional 2hrs of support after completion of training
- server access if the candidate laptop/desktop will not support for analysis
Payment Options
Paypal/Wire Transfer/cheque/Gpay/PhonePay/Online Gateway Razorpay(National and International)/Any UPI Payment
NGS Application
miRNASeq (Differential miRNA expression)
Period Of Training
15 days
Training Schedule
2 Hours Daily (One To One Training) Monday to Friday
Training Slots
Our working Time is 9:00 AM to 6:00 PM Indian Time
Available slots - 9:00 AM to 11:00 AM / 11:00 AM to 1:00 PM / 2:00 PM to 4:00 PM / 4:00 PM to 6:00 PM
Training Mode
Online/Offline
Online(For online training candidate have to install Skype and AnyDesk)(it is same like offline)
Offline(For offline training candidate have to come to head office Pune and bring their own laptop)
Sequencing Platform
Illumina / Ion Torrent
if other platform pacbio or nanopore or any other sequencing platform kindly write email to us.
Raw data
Demo Raw Data (NCBI SRA Database)
OR
one control and one treatment raw data from candidate will be included
If more than two sample in that case it will be under custom training kindly inquire
Training Starting Date
Registration - Open
Training can be started on any date any timing as per the candidate convenience
Module-I
Advanced Bioinformatics
- Introduction to Bioinformatics
- Understanding Genomics Bioinformatics
- Industry based Databases Data Retreival (NCBI,UCSC - Batch retreival Understanding)
- Gene and Genome data Vizualization - UCSC
- Gene Prediction and Functional annotation
- Industry based Tools execution (BLAST,BLAT etc)
- Standalone/offline BLAST Understanding for large scale genomic data handaling
- PCR primer designing and specificity check
- Basics of Programming (Python)
- Linux for NGS data analysis
Module-III
miRNASeq Data Analysis
- Data Retrieval (NCBI SRA) & Introduction to data types
- Read Quality Check (FastQC & Cutadapt)
- Alignment of reads using reference Genome (miRDeep2)
- Known & Novel miRNA Detection (miRDeep2)
- miRNA Target prediction (psRNATarget)
- Differential expression analysis (edgeR)
- Different plots (heatmap, volcano etc) using R
- Pathway & Gene ontology enrichment analysis
Eligibility
B.Sc. / M.Sc. Biotech / Microbiology / Chemistry / Biochemistry / Botany / Zoology / Bioinformatics / Genetics / Any Life sciences graduates & Postgraduates/ Biomedical Genetics / Molecular Science / Biosciences) B.Tech., (Biotechnology / Industrial Biotechnology / Bioinformatics) B. Pharmacy / M. Pharmacy.
Industrial Exposure
100% based on Industrial exposure/Research
Certificate
All the participants will receive certificates on successful completion of training
Support
- live recording during training as well as training manual will be provided
- Additional 2hrs of support after completion of training
- server access if the candidate laptop/desktop will not support for analysis
Payment Options
Paypal/Wire Transfer/cheque/Gpay/PhonePay/Online Gateway Razorpay(National and International)/Any UPI Payment
NGS Application
Whole Genome Denovo Assembly (Whole Genome Sequencing Analysis - Prokaryote)
Period Of Training
15 days
Training Schedule
2 Hours Daily (One To One Training) Monday to Friday
Training Slots
Our working Time is 9:00 AM to 6:00 PM Indian Time
Available slots - 9:00 AM to 11:00 AM / 11:00 AM to 1:00 PM / 2:00 PM to 4:00 PM / 4:00 PM to 6:00 PM
Training Mode
Online/Offline
Online(For online training candidate have to install Skype and AnyDesk)(it is same like offline)
Offline(For offline training candidate have to come to head office Pune and bring their own laptop)
Sequencing Platform
Illumina / Ion Torrent
if other platform pacbio or nanopore or any other sequencing platform kindly write email to us.
Raw data
Demo Raw Data (NCBI SRA Database)
OR
one sample raw data from candidate will be included
If more than one sample in that case it will be under custom training kindly inquire
Training Starting Date
Registration - Open
Training can be started on any date any timing as per the candidate convenience
Module-I
Advanced Bioinformatics
- Introduction to Bioinformatics
- Understanding Genomics Bioinformatics
- Industry based Databases Data Retreival (NCBI,UCSC - Batch retreival Understanding)
- Gene and Genome data Vizualization - UCSC
- Gene Prediction and Functional annotation
- Industry based Tools execution (BLAST,BLAT etc)
- Standalone/offline BLAST Understanding for large scale genomic data handaling
- PCR primer designing and specificity check
- Basics of Programming (Python)
- Linux for NGS data analysis
Module-III
Whole Genome Denovo Assembly Data Analysis
- Data Retrieval (NCBI SRA) & Introduction to data types
- Read Quality Check (FastQC & Cutadapt)
- Contig Assembly(SPAdes/SOAPdenovo/velvet/Masurca/Canu)
- Scaffolding & Gap Closure
- Assembly statistics(N50 value etc)
- Repeat Masking
- SRR Discovery
- Gene/Orf prediction(prodigal/prokka/orf finder/Glimmer3/GeneMarkHMM/
- Functional annotation(Gene Ontology & Pathway(KEGG)/COG
- Genome and Gene representation using circos
- Phylogenetic Analysis
- Comparative genomics / Synteny Analysis
Eligibility
B.Sc. / M.Sc. Biotech / Microbiology / Chemistry / Biochemistry / Botany / Zoology / Bioinformatics / Genetics / Any Life sciences graduates & Postgraduates/ Biomedical Genetics / Molecular Science / Biosciences) B.Tech., (Biotechnology / Industrial Biotechnology / Bioinformatics) B. Pharmacy / M. Pharmacy.
Industrial Exposure
100% based on Industrial exposure/Research
Certificate
All the participants will receive certificates on successful completion of training
Support
- live recording during training as well as training manual will be provided
- Additional 2hrs of support after completion of training
- server access if the candidate laptop/desktop will not support for analysis
Payment Options
Paypal/Wire Transfer/cheque/Gpay/PhonePay/Online Gateway Razorpay(National and International)/Any UPI Payment
NGS Application
Targeted metagenome (16s rRNA / ITS / 18s rRNA diversity study)
Period Of Training
15 days
Training Schedule
2 Hours Daily (One To One Training) Monday to Friday
Training Slots
Our working Time is 9:00 AM to 6:00 PM Indian Time
Available slots - 9:00 AM to 11:00 AM / 11:00 AM to 1:00 PM / 2:00 PM to 4:00 PM / 4:00 PM to 6:00 PM
Training Mode
Online/Offline
Online(For online training candidate have to install Skype and AnyDesk)(it is same like offline)
Offline(For offline training candidate have to come to head office Pune and bring their own laptop)
Sequencing Platform
Illumina / Ion Torrent
if other platform pacbio or nanopore or any other sequencing platform kindly write email to us.
Raw data
Demo Raw Data (NCBI SRA Database)
OR
one sample raw data from candidate will be included
If more than one sample in that case it will be under custom training kindly inquire
Training Starting Date
Registration - Open
Training can be started on any date any timing as per the candidate convenience
Module-I
Advanced Bioinformatics
- Introduction to Bioinformatics
- Understanding Genomics Bioinformatics
- Industry based Databases Data Retreival (NCBI,UCSC - Batch retreival Understanding)
- Gene and Genome data Vizualization - UCSC
- Gene Prediction and Functional annotation
- Industry based Tools execution (BLAST,BLAT etc)
- Standalone/offline BLAST Understanding for large scale genomic data handaling
- PCR primer designing and specificity check
- Basics of Programming (Python)
- Linux for NGS data analysis
Module-III
Targeted Metagenome Data Analysis
- Introduction to Metagenomics
- Quality Check & Filtering (FastQC, Cutadapt)
- Prepare mapping file containing features and barcodes
- Demultiplexing and quality filtering sequence reads
- OTUs identification (Qiime)
- Retrive analysis summary from BIOM file
- Diversity Analysis
- Taxonomic composition and relative abundance plots
- Taxonomic Heatmap Analysis
- Estimation of species richness and sampling depth analysis
- Phylogenetic Analysis of Identified community (MEGA, iTOL)
- Species enrichment plots for each sample (KRONA)
NOTE: all targeted metagenomics will be used Qiime pipeline and custom pipeline inhouse developed at arraygen
Eligibility
B.Sc. / M.Sc. Biotech / Microbiology / Chemistry / Biochemistry / Botany / Zoology / Bioinformatics / Genetics / Any Life sciences graduates & Postgraduates/ Biomedical Genetics / Molecular Science / Biosciences) B.Tech., (Biotechnology / Industrial Biotechnology / Bioinformatics) B. Pharmacy / M. Pharmacy.
Industrial Exposure
100% based on Industrial exposure/Research
Certificate
All the participants will receive certificates on successful completion of training
Support
- live recording during training as well as training manual will be provided
- Additional 2hrs of support after completion of training
- server access if the candidate laptop/desktop will not support for analysis
Payment Options
Paypal/Wire Transfer/cheque/Gpay/PhonePay/Online Gateway Razorpay(National and International)/Any UPI Payment
NGS Application
Whole Genome Metagenome
Period Of Training
15 days
Training Schedule
2 Hours Daily (One To One Training) Monday to Friday
Training Slots
Our working Time is 9:00 AM to 6:00 PM Indian Time
Available slots - 9:00 AM to 11:00 AM / 11:00 AM to 1:00 PM / 2:00 PM to 4:00 PM / 4:00 PM to 6:00 PM
Training Mode
Online/Offline
Online(For online training candidate have to install Skype and AnyDesk)(it is same like offline)
Offline(For offline training candidate have to come to head office Pune and bring their own laptop)
Sequencing Platform
Illumina / Ion Torrent
if other platform pacbio or nanopore or any other sequencing platform kindly write email to us.
Raw data
Demo Raw Data (NCBI SRA Database)
OR
one sample raw data from candidate will be included
If more than one sample in that case it will be under custom training kindly inquire
Training Starting Date
Registration - Open
Training can be started on any date any timing as per the candidate convenience
Module-I
Advanced Bioinformatics
- Introduction to Bioinformatics
- Understanding Genomics Bioinformatics
- Industry based Databases Data Retreival (NCBI,UCSC - Batch retreival Understanding)
- Gene and Genome data Vizualization - UCSC
- Gene Prediction and Functional annotation
- Industry based Tools execution (BLAST,BLAT etc)
- Standalone/offline BLAST Understanding for large scale genomic data handaling
- PCR primer designing and specificity check
- Basics of Programming (Python)
- Linux for NGS data analysis
Module-III
Whole Genome Metagenome Data Analysis
- Introduction to Metagenomics
- Quality Check & Filtering (FastQC, Cutadapt)
- Assembling the metagenomes ( SqueezeMeta )
- Taxonomic binning of the communities (NR,COG,KEGG Database)
- Clustered into genome bins
- Bin refinement
- Visualize the community and the extracted bins (R and Anvio)
- Find the abundaces of the draft genomes (bins) across the samples
- Re-assemble the consolidated bin set & Vizualization of bin
- Determine the taxonomy of each bin
- Functional annotation of bins
- Pathway enrichment
- Phylogenetic analysis
Eligibility
B.Sc. / M.Sc. Biotech / Microbiology / Chemistry / Biochemistry / Botany / Zoology / Bioinformatics / Genetics / Any Life sciences graduates & Postgraduates/ Biomedical Genetics / Molecular Science / Biosciences) B.Tech., (Biotechnology / Industrial Biotechnology / Bioinformatics) B. Pharmacy / M. Pharmacy.
Industrial Exposure
100% based on Industrial exposure/Research
Certificate
All the participants will receive certificates on successful completion of training
Support
- live recording during training as well as training manual will be provided
- Additional 2hrs of support after completion of training
- server access if the candidate laptop/desktop will not support for analysis
Payment Options
Paypal/Wire Transfer/cheque/Gpay/PhonePay/Online Gateway Razorpay(National and International)/Any UPI Payment
NGS Application
Metatranscriptome(metagenomic mRNA differential expression)
Period Of Training
15 days
Training Schedule
2 Hours Daily (One To One Training) Monday to Friday
Training Slots
Our working Time is 9:00 AM to 6:00 PM Indian Time
Available slots - 9:00 AM to 11:00 AM / 11:00 AM to 1:00 PM / 2:00 PM to 4:00 PM / 4:00 PM to 6:00 PM
Training Mode
Online/Offline
Online(For online training candidate have to install Skype and AnyDesk)(it is same like offline)
Offline(For offline training candidate have to come to head office Pune and bring their own laptop)
Sequencing Platform
Illumina / Ion Torrent
if other platform pacbio or nanopore or any other sequencing platform kindly write email to us.
Raw data
Demo Raw Data (NCBI SRA Database)
OR
one control and one treatment raw data from candidate will be included
If more than two sample in that case it will be under custom training kindly inquire
Training Starting Date
Registration - Open
Training can be started on any date any timing as per the candidate convenience
Module-I
Advanced Bioinformatics
- Introduction to Bioinformatics
- Understanding Genomics Bioinformatics
- Industry based Databases Data Retreival (NCBI,UCSC - Batch retreival Understanding)
- Gene and Genome data Vizualization - UCSC
- Gene Prediction and Functional annotation
- Industry based Tools execution (BLAST,BLAT etc)
- Standalone/offline BLAST Understanding for large scale genomic data handaling
- PCR primer designing and specificity check
- Basics of Programming (Python)
- Linux for NGS data analysis
Module-III
Metatranscriptome Data Analysis
- Introduction to Metatranscriptomics
- Quality Check & Filtering (FastQC & Cutadapt)
- Transcriptome Assembly , Annotaion and abundance calculations (squeezmeta pipeline)
- Identify profile specific organisms & Differential gene expression(edgeR / DESeq2)
- Functional annotation and gene set enrichment (DAVID)
- Go and Pathway enrichment Analysis (PantherDB)
- StringDB and Cytoscape interaction network
- Volcano plot & Heatmap(R programming)
Eligibility
B.Sc. / M.Sc. Biotech / Microbiology / Chemistry / Biochemistry / Botany / Zoology / Bioinformatics / Genetics / Any Life sciences graduates & Postgraduates/ Biomedical Genetics / Molecular Science / Biosciences) B.Tech., (Biotechnology / Industrial Biotechnology / Bioinformatics) B. Pharmacy / M. Pharmacy.
Industrial Exposure
100% based on Industrial exposure/Research
Certificate
All the participants will receive certificates on successful completion of training
Support
- live recording during training as well as training manual will be provided
- Additional 2hrs of support after completion of training
- server access if the candidate laptop/desktop will not support for analysis
Payment Options
Paypal/Wire Transfer/cheque/Gpay/PhonePay/Online Gateway Razorpay(National and International)/Any UPI Payment
NGS Application
PSI-Seq (Pseudouridine Site Identification)
Period Of Training
15 days
Training Schedule
2 Hours Daily (One To One Training) Monday to Friday
Training Slots
Our working Time is 9:00 AM to 6:00 PM Indian Time
Available slots - 9:00 AM to 11:00 AM / 11:00 AM to 1:00 PM / 2:00 PM to 4:00 PM / 4:00 PM to 6:00 PM
Training Mode
Online/Offline
Online(For online training candidate have to install Skype and AnyDesk)(it is same like offline)
Offline(For offline training candidate have to come to head office Pune and bring their own laptop)
Sequencing Platform
Illumina / Ion Torrent
if other platform pacbio or nanopore or any other sequencing platform kindly write email to us.
Raw data
Demo Raw Data (NCBI SRA Database)
OR
one sample raw data from candidate will be included
If more than one sample in that case it will be under custom training kindly inquire
Training Starting Date
Registration - Open
Training can be started on any date any timing as per the candidate convenience
Module-I
Advanced Bioinformatics
- Introduction to Bioinformatics
- Understanding Genomics Bioinformatics
- Industry based Databases Data Retreival (NCBI,UCSC - Batch retreival Understanding)
- Gene and Genome data Vizualization - UCSC
- Gene Prediction and Functional annotation
- Industry based Tools execution (BLAST,BLAT etc)
- Standalone/offline BLAST Understanding for large scale genomic data handaling
- PCR primer designing and specificity check
- Basics of Programming (Python)
- Linux for NGS data analysis
Module-III
PSI-Seq Data Analysis
- Overview of NGS & detailed understanding
- Data Retrieval (NCBI SRA) & Data types
- Identification of Pseudouridine sites using CMCT
- Read Quality Check (FastQC & Cutadapt)
- Alignment of reads using reference Genome (Bowtie2)
- Visualization of mapped reads (IGV)
- Generate metrics at single nucleotide positions of Reference Genome (bam-readcount)
- Basics on R programming
- Pseudouridine site identification by calculating the "pseudouridylation scores"
- Downstream analysis of the identified pseudo-uridine sites(Annotation,GO and Pathway enrichment analysis)
- Generating Advanced Plots(h-plot, scatter-plot,heatmap) to represent Pseudo-uridylation sites(using R)
- Channelling the analysis towards the regulation effect of the pseudo uridines in the mRNA- Combining RNA-Seq with PSI-Seq analysis
- Gene Expression Quantification(ht-seq)
- Downstream analysis of differentially expressed genes(Annotation,GO and Pathway enrichment analysis)
- Pathway Network analysis using stringDB(PPI) & Cytoscapes
Eligibility
B.Sc. / M.Sc. Biotech / Microbiology / Chemistry / Biochemistry / Botany / Zoology / Bioinformatics / Genetics / Any Life sciences graduates & Postgraduates/ Biomedical Genetics / Molecular Science / Biosciences) B.Tech., (Biotechnology / Industrial Biotechnology / Bioinformatics) B. Pharmacy / M. Pharmacy.
Industrial Exposure
100% based on Industrial exposure/Research
Certificate
All the participants will receive certificates on successful completion of training
Support
- live recording during training as well as training manual will be provided
- Additional 2hrs of support after completion of training
- server access if the candidate laptop/desktop will not support for analysis
Payment Options
Paypal/Wire Transfer/cheque/Gpay/PhonePay/Online Gateway Razorpay(National and International)/Any UPI Payment
|
|
We also offer customised online training in NGS data analysis, if participant want to perform analysis with their own raw data as well as custom tools or cutom pipelines or automate parallel execution or as per the reference paper or new algorithm development as per the candidate request it comes under custom training. If NGS platform is pacbio or nanopore it will come under custom training. Please send us inquiry and one of our business executive will contact you soon. |
|
|
|
|
|
|
|
|
6-Months BICP
